Protein ZmGATA21 | |
---|---|
Information | |
TF Name: | ZmGATA21 |
Species: | Maize |
TF Family: | C2C2-GATA |
Gene Name(Synonym): | GATA21 |
Uniprot ID: | A0A1D6PDQ1 |
ZmGATA21 is a protein in the C2C2-GATA family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d009604 | DAPseq | sequence | fimo | position | |
Zm00001d009604 | DAPseq | sequence | fimo | position | |
Zm00001d009604 | ChIPseq | sequence | fimo | position | |
Zm00001d009604 | PChIPseq | sequence | fimo | position |
MLQKELPRCACGDRSAAPPAFSLLFPKPMGLPAEQWYCYHEEGGASPYGAASTPIDCTLSLGTPSTRRAESAGVGVAAAL
MEEPRQGSPPRRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRRRTSAAGTLDRRAPPQQQWGCYGPGAGKSAAS
YGMYDGDVGVVAVDGPCLSWMLEVVPSSPAFAARERRTLSPYY
MLQKELPRCACGDRSAAPPAFSLLFPKPMGLPAEQWYCYHEEGGASPYGAASTPIDCTLSLGTPSTRRAESAGVGVAAAL
MEEPRQGSPPRRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRRRTSAAGTLDRRAPPQQQWGCYGPGAGKSAAS
YGMYDGDVGVVAVDGPCLSWMLEVVPSSPAFAARERRTLSPYY
Secondary Structure Color Code | |
---|---|
BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
ATGCTGCAGAAGGAGCTTCCGCGGT...
ATGCTGCAGAAGGAGCTTCCGCGGTGCGCGTGCGGCGACCGGAGCGCCGCGCCGCCGGCCTTCTCGCTGCTGTTCCCCAAGCCCATGGGGCTGCCGGCGGAGCAGTGGTACTGCTACCACGAGGAGGGCGGCGCGTCGCCGTACGGCGCAGCCAGCACCCCGATCGACTGCACGCTGTCGCTCGGCACGCCGTCCACGCGCCGGGCCGAATCAGCCGGCGTCGGCGTCGCCGCCGCCTTGATGGAGGAGCCCCGCCAAGGCTCTCCGCCCCGGCGGTGCGCCAACTGCGACACCACGTCGACGCCGCTGTGGCGGAACGGCCCGCGGGGACCCAAGTCGCTGTGCAACGCCTGCGGGATCCGGTACAAGAAGGAGGAGCGCCGGCGACGTACGAGTGCGGCGGGTACGCTCGACCGCCGCGCGCCGCCGCAGCAGCAGTGGGGATGCTACGGCCCGGGCGCGGGGAAGTCGGCGGCGTCCTACGGGATGTACGATGGCGACGTCGGCGTCGTGGCCGTGGACGGGCCCTGCCTGTCGTGGATGCTCGAAGTCGTACCCTCCTCGCCGGCGTTCGCCGCCCGGGAGAGGCGCACTCTGTCCCCGTACTACTAG
MGLPAEQWYCYHEEGGASPYGAASNPDRLHAVARHAVHAPGRISRRRRRRRLDGGAPPRLSAPASLCNACGIRYKKEERR
RRTSAAGTLDRRAPPQQQWGCYGPGAGKSAASYGMYDGDVGVVAVDGPCLSWMLEVVPSSPAFAARERRTLSPYY
ATGGGGCTGCCGGCGGAGCAGTGGT...
ATGGGGCTGCCGGCGGAGCAGTGGTACTGCTACCACGAGGAGGGCGGCGCGTCGCCGTACGGCGCAGCCAGCAACCCCGATCGACTGCACGCTGTCGCTCGGCACGCCGTCCACGCGCCGGGCCGAATCAGCCGGCGTCGGCGTCGCCGCCGCCTTGATGGAGGAGCCCCGCCAAGGCTCTCCGCCCCGGCGTCGCTGTGCAACGCCTGCGGGATCCGGTACAAGAAGGAGGAGCGCCGGCGACGTACGAGTGCGGCGGGTACGCTCGACCGCCGCGCGCCGCCGCAGCAGCAGTGGGGATGCTACGGCCCGGGCGCGGGGAAGTCGGCGGCGTCCTACGGGATGTACGATGGCGACGTCGGCGTCGTGGCCGTGGACGGGCCCTGCCTGTCGTGGATGCTCGAAGTCGTACCCTCCTCGCCGGCGTTCGCCGCCCGGGAGAGGCGCACTCTGTCCCCGTACTACTAG
MGLPAEQWYCYHEEGGASPYGAASNPDRLHAVARHAVHAPGRISRRRRRRRLDGGAPPRLSAPAVRQLRHHVDAAVAERP
AGTQVAVQRLRDPVQEGGAPATYECGGYARPPRAAAAAVGMLRPGRGEVGGVLRDVRWRRRRRGRGRALPVVDARSRTLL
AGVRRPGEAHSVPVLL
GAGCGCCGCGCCGCCGCCTTTCTTC...
GAGCGCCGCGCCGCCGCCTTTCTTCGCTGTTGTTCCCCAAAGCCCATGGGGCTGCCGGCGGAGCAGTGGTACTGCTACCACGAGGAGGGCGGCGCGTCGCCGTACGGCGCAGCCAGCAACCCCGATCGACTGCACGCTGTCGCTCGGCACGCCGTCCACGCGCCGGGCCGAATCAGCCGGCGTCGGCGTCGCCGCCGCCTTGATGGAGGAGCCCCGCCAAGGCTCTCCGCCCCGGCGGTGCGCCAACTGCGACACCACGTCGACGCCGCTGTGGCGGAACGGCCCGCGGGGACCCAAGTCGCTGTGCAACGCCTGCGGGATCCGGTACAAGAAGGAGGAGCGCCGGCGACGTACGAGTGCGGCGGGTACGCTCGACCGCCGCGCGCCGCCGCAGCAGCAGTGGGGATGCTACGGCCCGGGCGCGGGGAAGTCGGCGGCGTCCTACGGGATGTACGATGGCGACGTCGGCGTCGTGGCCGTGGACGGGCCCTGCCTGTCGTGGATGCTCGAAGTCGTACCCTCCTCGCCGGCGTTCGCCGCCCGGGAGAGGCGCACTCTGTCCCCGTACTACTAG
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